1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcatgagtcatacctcgtcgaatctttttcctgcaccttgtaaatttcttactagcttgcgtggattccaattcggagaactcgttcaattttccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGCAATCCCACTTAGGAGTGACCCCATCAGGCATCCCACGAGGTGCCCCGG
species | Physcomitrella patens |
transcript | PP1S123_99V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAGAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGEST: gi|100389507|gb|BY988985.1|BY988985
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
EST: TACGCTCGCCGAAACCACAA-TGGCAGAAGCTGCTCAGAAAGCTTGCGAG ATGCTTCATGTGCCGCAEST: gi|208399111|gb|DC904520.1|DC904520
genomic: TACGCTCGCCGAC-CCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCA
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAGAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGEST: gi|208361876|gb|DC953926.1|DC953926
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGEST: gi|208368590|gb|DC936029.1|DC936029
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
ttactagcttgcgtggattccaattcggagaactcgttcaattttccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGCAATCCCACTTAGGAGTGACCCCATCAGGCATCCCACGAGGTGCCCCGG
ttcttac putative branch site (score: 16)
ttttccac putative PPT
ttcaatttt TA-rich tract