1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctggtataattaggttagaagctctttcgtcccactctaagccgtaatgagagtgtaatttgaagtcacgctaaccgatttgtatacttcattatgtagACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACCACCGTACCAAGTCTTGGTTGATACAAACTTTATCAACTTCTCAATCCAA
species | Physcomitrella patens |
transcript | PP1S11_99V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAACCCAAAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGT ACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACCEST: gi|208348150|gb|DC920941.1|DC920941
genomic: CTGAACCCAAAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGTgtaagttcac ... cattatgtagACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACC
EST: AAGAGGNAGGATACTT-CNTGGAGAAGCTCCCCAGNAACGT ACCCAATACTTCATCAGCTCTTTTCTTCNAACATAACTCTGCGCNTGGACCEST: gi|208397157|gb|DC908171.1|DC908171
genomic: AAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGTgtaagttcac ... cattatgtagACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACC
EST: CTGAACCCAAAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGT ACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACCEST: gi|208387835|gb|DC941404.1|DC941404
genomic: CTGAACCCAAAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGTgtaagttcac ... cattatgtagACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACC
EST: CTGAACCCAAAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGT ACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACC
genomic: CTGAACCCAAAGAGGAAGGATACTTCCTTGGAGAAGCTCCCCAGAAACGTgtaagttcac ... cattatgtagACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACC
taatgagagtgtaatttgaagtcacgctaaccgatttgtatacttcattatgtagACCAAATACTTCATCAGCTCTTTTCTTCAAACATAACTCTGCGCTTGGACCACCGTACCAAGTCTTGGTTGATACAAACTTTATCAACTTCTCAATCCAA
cgctaac putative branch site (score: 1)
cttcatt putative PPT
taatttgaa TA-rich tract