1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgatcattctagactttttgattttttattattattaatttttttttccctgaacttgtagaccctgggtgtgtggatgaactttctggattgacattactggaagatattggacatttaggagtactaaagcttgtacttgaactatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTGGAGAGCTGTTTGAGCGAATTTGTAAAGCAGTCCGGTTCAGTGAAGATG
species | Physcomitrella patens |
transcript | PP1S116_98V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTEST: gi|162268203|gb|FC443881.1|FC443881
genomic: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
EST: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATATTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTEST: gi|67570719|gb|BJ943543.1|BJ943543
genomic: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
EST: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTEST: gi|162273827|gb|FC449758.1|FC449758
genomic: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
EST: CAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTEST: gi|100435837|gb|BY961115.1|BY961115
genomic: CAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
EST: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTEST: gi|100404888|gb|BY991331.1|BY991331
genomic: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
EST: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTEST: gi|100361175|gb|BY946951.1|BY946951
genomic: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
EST: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAG ATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
genomic: TCATCAACCATCGATCGTTGCGGCATCCCAACATAGTGCGATTTCAGGAGgtgatcattc ... actatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGT
actggaagatattggacatttaggagtactaaagcttgtacttgaactatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTGGAGAGCTGTTTGAGCGAATTTGTAAAGCAGTCCGGTTCAGTGAAGATG
tactaaa putative branch site (score: 46)
ctatttc putative PPT
aagatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcattctagactttttgattttttattattattaatttttttttccctgaacttgtagaccctgggtgtgtggatgaactttctggattgacattactggaagatattggacatttaggagtactaaagcttgtacttgaactatttcagATCATGTTGACTCCAACCCACTTGGCCATTGTGATGGAATATGCTGCTGGTGGAGAGCTGTTTGAGCGAATTTGTAAAGCAGTCCGGTTCAGTGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG