1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcgccatataaatttatgtgcatcagttctccttgaatagcatgattgcctgctagtgaaggaattcagaatttctgatcttgtgagaattcttctgcagGAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGAAGGGGAAGGTTCCTGTGGCTCTGGATCATCTCAGCATCCGTGGAAACAA
species | Physcomitrella patens |
transcript | PP1S116_13V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAG GAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGAEST: gi|162218816|gb|FC394359.1|FC394359
genomic: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAGgtgcgtcgtc ... tcttctgcagGAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGA
EST: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAG GAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGAEST: gi|67573459|gb|BJ946283.1|BJ946283
genomic: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAGgtgcgtcgtc ... tcttctgcagGAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGA
EST: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAG GAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGAEST: gi|18370357|gb|BJ201959.1|BJ201959
genomic: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAGgtgcgtcgtc ... tcttctgcagGAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGA
EST: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAG GAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGA
genomic: GGTATCGATAGAACTAAAAAATGGTACCATTGTGCACGGCACTATCACAGgtgcgtcgtc ... tcttctgcagGAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGA
ttgcctgctagtgaaggaattcagaatttctgatcttgtgagaattcttctgcagGAGTGGATATCAGCATGAACACGCATATGAAGTCCGTCAAACTCACTTTGAAGGGGAAGGTTCCTGTGGCTCTGGATCATCTCAGCATCCGTGGAAACAA
ttctgat putative branch site (score: 8)
ttcttctgc putative PPT
agaattt TA-rich tract