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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaacattctcagctagaatttgattgtctctctgagatttgtttttcagaattaactttcctatttgttcaaaccgcgtttgatcttgaaatttggatcattcttgcagCTGTTTGAGATGGGACTGGAGCTTTCTTTAGCGCGTCTTAAAGCTCTGGCGAAATTTGCTTTTGGCATAGGACTTGCCCAG

Basic information

species Physcomitrella patens
transcript PP1S114_83V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S114_83V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtaacattctcagctagaatttgattgtctctctgagatttgtttttcagaattaactttcctatttgttcaaaccgcgtttgatcttgaaatttggatcattcttg-cagCTGTTTGAGATGGGACTGGAGCTTTCTTTAGCGCGTCTTAAAGCTCTGGCGAAATTTGCTTTTGGCATAGGACTTGCCCAG
                         |||   |    |  |  | ||||  |  |  |||  | |   ||  ||   |     |  ||  |||   ||   ||| ||  ||| ||||| ||||||||||| || ||||||||  | || ||||| |||||||| || ||||||||||||||||| |||||  | |||
------------------------gtgagcattgtgcataattatgttcataggctttacgtgttgaatgagt---agtaatgactggcctt---atcctgattatctttggcagCTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATTTGCTTTTGGCATGGGACTAACTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttcctatttgttcaaaccgcgtttgatcttgaaatttggatcattcttgcagCTGTTTGAGATGGGACTGGAGCTTTCTTTAGCGCGTCTTAAAGCTCTGGCGAAATTTGCTTTTGGCATAGGACTTGCCCAG
                                           tcattctt  CT-rich tract
                               ttgaaattt  TA-rich tract