1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gggaatgcaagcaatttctgttgggcatataattggaacttatcttggtttcgtccaagttgaggaaggaattagttacttttcttgtgttttgttccagCTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAGCATCTGTTCGAGGTGATCAATTCTCGAGAGGACGTTCTACGTCGCCTCA
species | Physcomitrella patens |
transcript | PP1S114_190V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATTGCCATGCTGCAGGATACTTATGGTGCCTTCCGTGATGACATACAG CTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAGEST: gi|162164808|gb|FC341336.1|FC341336
genomic: TCATTGCCATGCTGCAGGATACTTATGGTGCCTTCCGTGATGACATACAGgtgagtgcgt ... tttgttccagCTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAG
EST: TCATTGCCATGCTGCAGGATACTTATGGTGCCTTCCGTGATGCCATACAG CTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAG
genomic: TCATTGCCATGCTGCAGGATACTTATGGTGCCTTCCGTGATGACATACAGgtgagtgcgt ... tttgttccagCTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAG
tggtttcgtccaagttgaggaaggaattagttacttttcttgtgttttgttccagCTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAGCATCTGTTCGAGGTGATCAATTCTCGAGAGGACGTTCTACGTCGCCTCA
cttttcttgtgtttt CT-rich tract
aattagttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaatgcaagcaatttctgttgggcatataattggaacttatcttggtttcgtccaagttgaggaaggaattagttacttttcttgtgttttgttccagCTGCGCTTGTGGAGAAGAGGGGGCAAGGAGGTAGATCGTCAAACGGCGGAGCATCTGTTCGAGGTGATCAATTCTCGAGAGGACGTTCTACGTCGCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA