1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcttaatttcttccttcagccacggcttatcaaattagcagtagcatttggtcatgtctatcagtgctcttcccactgcatacgatcaagtttagattcgtttatataatcgtaacctttatacttcccgtctctgttgagtaacctgaaatttggtttaaattggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG
species | Physcomitrella patens |
transcript | PP1S10_28V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|208380037|gb|DC914587.1|DC914587
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTANAGGGGATGGATTACANAACATTGATCCTCAG GTCACAATGTCGATTGCACGEST: gi|100426542|gb|BY977292.1|BY977292
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACG
EST: TTAGCGGGGGAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|100389168|gb|BY952372.1|BY952372
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|162268877|gb|FC446011.1|FC446011
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|162238266|gb|FC415860.1|FC415860
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|208348340|gb|DC905540.1|DC905540
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|100430742|gb|BY978374.1|BY978374
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGEST: gi|100355184|gb|BY965046.1|BY965046
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
EST: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAG GTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
genomic: TTAGCGGGGAAGCTCTTAGAGGGGATGGATTACAGAACATTGATCCTCAGgtgcttaatt ... tggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTG
ttatacttcccgtctctgttgagtaacctgaaatttggtttaaattggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG
gagtaac putative branch site (score: 5)
aaatttggtttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttaatttcttccttcagccacggcttatcaaattagcagtagcatttggtcatgtctatcagtgctcttcccactgcatacgatcaagtttagattcgtttatataatcgtaacctttatacttcccgtctctgttgagtaacctgaaatttggtttaaattggttggcagGTCACAATGTCGATTGCACGAGAAGTAGCAGCAATAACTCGACTTGGCTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG