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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacttagcaatcactgcggcttttaagatgccctggtggcccatgtccaaggatggtaagaaggggaagaaatcaaccactagtggttcatctgatggagGTTCGGGACAGTCCCAGAGGCCTAGGCCACGCGCGAGGGAAGACAACGGAAGTAGTAAGTACAGTTCCCGCCACAGTTTAGATTTGGTTTCGGAGGCAGG

Basic information

species Physcomitrella patens
transcript PP1S10_200V6.2
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaaggatggtaagaaggggaagaaatcaaccactagtggttcatctgatggagGTTCGGGACAGTCCCAGAGGCCTAGGCCACGCGCGAGGGAAGACAACGGAAGTAGTAAGTACAGTTCCCGCCACAGTTTAGATTTGGTTTCGGAGGCAGG
                                            atctgat  putative branch site (score: 4)
                                         ttcatct  CT-rich tract
                     aagaaat  TA-rich tract