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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaattttgtaatatacacctcaaagcatgctacagttaggcatcgtcgtggtcgagttgtgtacactgcataaaactttcttagaggtttgtttacgtgcctaactgtgctcaattgtacagGTTGGGCCGAGGCTGACTAAGGATATAGAGCGTTTCCCTCCTAACAACGTCTTGCTCATGCTTGCTGGGGCGGGTCTGCTATGGATGGGATGGGCTGGGT

Basic information

species Physcomitrella patens
transcript PP1S109_32V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S109_32V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv07s0031g02990.t01 (Vitis vinifera), 3'ss of exon 1
gtataaattttgtaatatacacctcaaagcatgctacagttaggcatcgtcgtggtcgagttgtgtacactgcataaaactttcttagaggtttgtttacgtgcct----aactgtgctcaattgtacagGTTGGGCCGAGGCTGACTAAGGATATAGAGCGTTTCCCTCCTAACAACGTCTTGCTCATGCTTGCTGGGGCGGGTCTGCTATGGATGGGATGGGCTGGGT
                              | |||  | || |  |       |    | ||   | |||    ||    | | | | |||| |||  | |||       |  ||   | |  | ||||||| ||||| ||    |  | ||| |  ||| | || || || ||||| ||  |||| ||||||||||||||||| ||||| ||| |||||||||| ||||
------------------------------aggctttattttgaaaataaaaggaaaaatttcatttcacctggtagtggtatatgataggtctgtgaaggtgatgggggagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcataaaactttcttagaggtttgtttacgtgcctaactgtgctcaattgtacagGTTGGGCCGAGGCTGACTAAGGATATAGAGCGTTTCCCTCCTAACAACGTCTTGCTCATGCTTGCTGGGGCGGGTCTGCTATGGATGGGATGGGCTGGGT
                               gcctaac  putative branch site (score: 2)
                    tttgttta  TA-rich tract