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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatcacttagctctatgattcaatcttcacctgcaaatgaagcatatacagttgctggaattttttcccaattaagtgcgtattgttgttgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTATGCGAAGAATCCTGAGTTTCTGGGATGTGTCGAAAACGCTTTGGGAA

Basic information

species Physcomitrella patens
transcript PP1S106_16V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429739|gb|BY959714.1|BY959714
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAACTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18346203|gb|BJ178246.1|BJ178246
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100426321|gb|BY958839.1|BY958839
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGTG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100388263|gb|BY951865.1|BY951865
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100422802|gb|BY958008.1|BY958008
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100364728|gb|BY947878.1|BY947878
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100358870|gb|BY946730.1|BY946730
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|67574343|gb|BJ947167.1|BJ947167
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100386649|gb|BY970190.1|BY970190
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100452339|gb|CJ975221.1|CJ975221
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100385283|gb|BY950875.1|BY950875
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100396166|gb|BY972267.1|BY972267
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18359390|gb|BJ191451.1|BJ191451
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|208361729|gb|DC934969.1|DC934969
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18327178|gb|BJ159180.1|BJ159180
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100433798|gb|BY960712.1|BY960712
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100452623|gb|CJ975362.1|CJ975362
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100423908|gb|BY976585.1|BY976585
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100443652|gb|BY963749.1|BY963749
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAGGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100401401|gb|BY990984.1|BY990984
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100385568|gb|BY969905.1|BY969905
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100378561|gb|BY968661.1|BY968661
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100353592|gb|BY964884.1|BY964884
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100433033|gb|BY978779.1|BY978779
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100436049|gb|BY979354.1|BY979354
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100452865|gb|CJ975482.1|CJ975482
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18373891|gb|BJ205469.1|BJ205469
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100389978|gb|BY989058.1|BY989058
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100398916|gb|BY990580.1|BY990580
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100442905|gb|BY963400.1|BY963400
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18332361|gb|BJ164374.1|BJ164374
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100440203|gb|BY962116.1|BY962116
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|162264750|gb|FC440317.1|FC440317
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100445835|gb|CJ970134.1|CJ970134
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|67573259|gb|BJ946083.1|BJ946083
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|162272414|gb|FC449053.1|FC449053
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100398640|gb|BY990442.1|BY990442
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100422587|gb|BY976448.1|BY976448
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         CAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100445486|gb|CJ975635.1|CJ975635
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100388495|gb|BY952097.1|BY952097
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100414968|gb|BY975102.1|BY975102
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|208361815|gb|DC939037.1|DC939037
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100361912|gb|BY947689.1|BY947689
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100366110|gb|BY967284.1|BY967284
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100446294|gb|CJ970593.1|CJ970593
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100362785|gb|BY947527.1|BY947527
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100424612|gb|BY976727.1|BY976727
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100402552|gb|BY954892.1|BY954892
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|208384946|gb|DC903453.1|DC903453
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|208384825|gb|DC907438.1|DC907438
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTCTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100441331|gb|BY962620.1|BY962620
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|162274536|gb|FC450979.1|FC450979
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100359398|gb|BY984234.1|BY984234
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100397747|gb|BY990380.1|BY990380
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|208363654|gb|DC935349.1|DC935349
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18374969|gb|BJ206547.1|BJ206547
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|162266592|gb|FC441978.1|FC441978
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100442391|gb|BY981415.1|BY981415
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100361536|gb|BY984055.1|BY984055
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18330797|gb|BJ162803.1|BJ162803
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCA--G                         C-GGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100396260|gb|BY972314.1|BY972314
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100351703|gb|BY964507.1|BY964507
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         N-G--AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|100376437|gb|BY986166.1|BY986166
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAG
EST: gi|18374784|gb|BJ206362.1|BJ206362
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         --GG-AGGAGAGTCTAAGAAGATATTTGGGTGTCTTTTTCGCTGCACACGA
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATT-GGGTGTCTTTTTCGCTGCACACGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 25 (upstream exon), 11 (downstream exon)
Score: 1

CTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGGACAGCCAAATCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... tgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTATGCGAAGAATCCTGAGTTTCTGGGATGTGTCGAAAACGCTTTGGGAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacagttgctggaattttttcccaattaagtgcgtattgttgttgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTATGCGAAGAATCCTGAGTTTCTGGGATGTGTCGAAAACGCTTTGGGAA
              aatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatcacttagctctatgattcaatcttcacctgcaaatgaagcatatacagttgctggaattttttcccaattaagtgcgtattgttgttgagataaagCAGGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTATGCGAAGAATCCTGAGTTTCTGGGATGTGTCGAAAACGCTTTGGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - cacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgga