1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gacctccttcgatatatttttgtatgactatgagaatcccatttagattaatctcctctacttcatgtttgtatgactatagttcgtgtactttgtgcagGTTTTGTCTGGTTCATTCTGACTTTGAAGAAAGGCTCGTACAAGTATCAGTTTGGTCAATTTGCTTGGACGCACATGATTTTATTAGTTGTATTTGCACA
species | Physcomitrella patens |
transcript | PP1S106_169V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGATTGATCAAATATCACATGCTTATATGCTACTCACTGTACATCGCAG GTTTTGTCTGGGTCATTCTGACTTTTGA-GAA-GGCTCGTACAAGTATCAGEST: gi|100409675|gb|BY956050.1|BY956050
genomic: CGGATTGATCAAATATCACATGCTTATATGCTACTCACTGTACATCGCAGgtaacgtgtt ... ctttgtgcagGTTTTGTCTGGTTCATTCTGACTTT-GAAGAAAGGCTCGTACAAGTATCAG
EST: CGGATTGATCAAATATCACATGCTTATATGCTACTCACTGTACATCGCAG GTTTTGTCTGGTTCATTCTGACTTTGAAGAAAG-CTCGTACAAGTATCAGT
genomic: CGGATTGATCAAATATCACATGCTTATATGCTACTCACTGTACATCGCAGgtaacgtgtt ... ctttgtgcagGTTTTGTCTGGTTCATTCTGACTTTGAAGAAAGGCTCGTACAAGTATCAGT
gattaatctcctctacttcatgtttgtatgactatagttcgtgtactttgtgcagGTTTTGTCTGGTTCATTCTGACTTTGAAGAAAGGCTCGTACAAGTATCAGTTTGGTCAATTTGCTTGGACGCACATGATTTTATTAGTTGTATTTGCACA
gattaat putative branch site (score: 3)
tttgtat TA-rich tract