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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctttttcagattcttcagtcttattcatactcttttgagcgtagattactctagcttcgtagccgtagagtggcagtgttctgcaacaccctatttattattgcaaataatttactgatcttttcctggcagagaattgatactttgatcccctttttctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA

Basic information

species Physcomitrella patens
transcript PP1S101_254V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256410|gb|FC432441.1|FC432441
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|208374807|gb|DC936430.1|DC936430
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|100412621|gb|BY974825.1|BY974825
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|100386356|gb|BY988023.1|BY988023
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|100435307|gb|BY979177.1|BY979177
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|100424461|gb|BY958499.1|BY958499
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|100447407|gb|CJ971706.1|CJ971706
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
EST: gi|100447901|gb|CJ972200.1|CJ972200
EST:     ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG                         GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
genomic: ATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAGgtcctttttc ... ctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatcttttcctggcagagaattgatactttgatcccctttttctcttcgcagGCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA
                           tactttgatccccttt  CT-rich tract
                     aattgata  TA-rich tract