1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatctgtattaccacattggtctcttatctatgcttgagttttcgagcgcatgggatgcgtaggtatcttatattggagtcttttctgaggactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGGAGAAGGAGGTGAATGCTGTGTATGCTGGTGTGGCTGATGCCATTGACA
species | Physcomitrella patens |
transcript | PP1S101_201V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: NTAATGATCGTCTTGCTGAGTCTCTNANGCTGGAGCATCAGCTCGTCANG GTTCCATTTGAGCATTTGAAAAAAGCCATGCGGGTGAATTCCCGTTTGEST: gi|100447104|gb|CJ971403.1|CJ971403
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAG GTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGEST: gi|208390368|gb|DC933413.1|DC933413
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAG GTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGEST: gi|100397879|gb|BY953977.1|BY953977
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAG GTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGEST: gi|100359199|gb|BY965636.1|BY965636
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAG GTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGEST: gi|100397945|gb|BY954010.1|BY954010
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAG GTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGEST: gi|208358977|gb|DC939233.1|DC939233
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTANGCTGGAGCATCAGCTCGTCAAG GTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGEST: gi|100442345|gb|BY981369.1|BY981369
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTG
EST: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAG GTTTCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTTGGG
genomic: TTAATGATCGTCTTGCTGAGTCTCTTAGGCTGGAGCATCAGCTCGTCAAGgttagtttca ... gactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTT-GGT
agcgcatgggatgcgtaggtatcttatattggagtcttttctgaggactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGGAGAAGGAGGTGAATGCTGTGTATGCTGGTGTGGCTGATGCCATTGACA
tatcttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgtattaccacattggtctcttatctatgcttgagttttcgagcgcatgggatgcgtaggtatcttatattggagtcttttctgaggactctacagGTTCCATTTGAGCATTTGAAGAAAGCCATGCGGGTGAATTCCCGTTTGGTGGAGAAGGAGGTGAATGCTGTGTATGCTGGTGTGGCTGATGCCATTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT