1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atagtttctttcggtagaatacaggaagtgtatagtatcaccctagtgtttacaacacatgtcgagatgagttttgatttaaacgtatgaaatgcttcagGTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAGTACCAAGTTGTTCAGTTTGCCTTCGCAACGAAAGGAGCATGGCGGTATC
species | Physcomitrella patens |
transcript | PP1S101_1V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTAGGAGGTGGCCTCGTCCTTTTCAAATTATATCCGAAACCCGATCCAG GTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAGEST: gi|18365723|gb|BJ197800.1|BJ197800
genomic: CGTAGGAGGTGGCCTCGTCCTTTTCAAATTATATCCGAAACCCGATCCAGgttttccctc ... aatgcttcagGTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAG
EST: CGTAGGAGGTGGCCTCGTCCTTTTCAAATTATATCCGAAACCCGATCCAG GTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAG
genomic: CGTAGGAGGTGGCCTCGTCCTTTTCAAATTATATCCGAAACCCGATCCAGgttttccctc ... aatgcttcagGTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAG
gtgtttacaacacatgtcgagatgagttttgatttaaacgtatgaaatgcttcagGTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAGTACCAAGTTGTTCAGTTTGCCTTCGCAACGAAAGGAGCATGGCGGTATC
ttttgat putative branch site (score: 4)
agttttgatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtttctttcggtagaatacaggaagtgtatagtatcaccctagtgtttacaacacatgtcgagatgagttttgatttaaacgtatgaaatgcttcagGTGGACCAGTTGCAAGGGTGTGGAGACAGCGCGCAATTGAAGGCCATGAAGTACCAAGTTGTTCAGTTTGCCTTCGCAACGAAAGGAGCATGGCGGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA