1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctctgcttttttacattgttcggttttcataaggcttggaaaacgatatttagctgcacgtttggtgagtatttgaaagggcgtggtatgatttttgcagGTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATTGCAGGCGGAACTGGTGTCATGCCAGGAG
species | Physcomitrella patens |
transcript | PP1S101_151V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATG GTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATTEST: gi|162238353|gb|FC417338.1|FC417338
genomic: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATGgtaagtttct ... atttttgcagGTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATT
EST: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATG GTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATTEST: gi|100356963|gb|BY965366.1|BY965366
genomic: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATGgtaagtttct ... atttttgcagGTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATT
EST: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATG GTAACACCAAATTTTGTACGGAACTTTEST: gi|162160519|gb|FC336909.1|FC336909
genomic: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATGgtaagtttct ... atttttgcagGTAACACCAAATTT-GTACGGAACTTT
EST: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATG GTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATT
genomic: ATAACTGCTGTATGCAGCTTGTGTCGAAGCCCCAGCAGTTTGACGTCATGgtaagtttct ... atttttgcagGTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATT
atatttagctgcacgtttggtgagtatttgaaagggcgtggtatgatttttgcagGTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATTGCAGGCGGAACTGGTGTCATGCCAGGAG
tttttgc CT-rich tract
tatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctgcttttttacattgttcggttttcataaggcttggaaaacgatatttagctgcacgtttggtgagtatttgaaagggcgtggtatgatttttgcagGTAACACCAAATTTGTACGGAACTTTGGTAGCCAATACCGCAGCTGGTATTGCAGGCGGAACTGGTGTCATGCCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -agctgca