1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggcactatcaaatgtataagctcattttgtgaatcgcattgaattaactgggaatatgacgaagggataggagatagctgacgtgggttcatcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATTGCGGAATGAAAGACGGGAGGCGTTGAAAGAGGAGAAAGGGTCTTGGAA
species | Physcomitrella patens |
transcript | PP1S101_102V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|18343308|gb|BJ175346.1|BJ175346
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|100410555|gb|BY992159.1|BY992159
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|162169723|gb|FC345260.1|FC345260
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|208362017|gb|DC943472.1|DC943472
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|19790185|gb|BQ041743.1|BQ041743
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|18330261|gb|BJ162267.1|BJ162267
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|100412788|gb|BY992436.1|BY992436
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATEST: gi|208357531|gb|DC934053.1|DC934053
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
EST: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAG AGTCGGGCGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
genomic: GCAGACTCGGACTCGGGTGGTGGTGTGTGAGTTGCCCGGGAAAACTGCAGgtgagctcct ... atcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAAT
aactgggaatatgacgaagggataggagatagctgacgtgggttcatcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATTGCGGAATGAAAGACGGGAGGCGTTGAAAGAGGAGAAAGGGTCTTGGAA
aatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcactatcaaatgtataagctcattttgtgaatcgcattgaattaactgggaatatgacgaagggataggagatagctgacgtgggttcatcgggacagAGTCGGACGTTAAACCAGTCGACCAGTTGAGTCCCAAAGAGAGAAGAAAATTGCGGAATGAAAGACGGGAGGCGTTGAAAGAGGAGAAAGGGTCTTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA