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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttctttatggatgattgtcttatcttatttatgtattttcaattcaataatatccgccctgtgataagtgcattaatgttcactgtgtatatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGTCGTTGAATTATTCACGTCTCATATCTACCTATTCAGTGTTCGTGAAGGA

Basic information

species Physcomitrella patens
transcript PP1S100_63V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389803|gb|DC937438.1|DC937438
EST:     AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTG                         GATCACTAATTGTAATAGTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT
genomic: AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTGgtatttcctg ... atatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT
EST: gi|18372383|gb|BJ203985.1|BJ203985
EST:     AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTG                         GATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT
genomic: AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTGgtatttcctg ... atatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaataatatccgccctgtgataagtgcattaatgttcactgtgtatatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGTCGTTGAATTATTCACGTCTCATATCTACCTATTCAGTGTTCGTGAAGGA
                           cattaat  putative branch site (score: 3)
                            attaatgtt  TA-rich tract