Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagacttttatcattgaggattgatgcactcggtattgtctgtgctcaggactcatattaattgtcgtgtatgactggattttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG

Basic information

species Physcomitrella patens
transcript PP1S100_61V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67728148|gb|BJ978407.1|BJ978407
EST:     TCGGGATCGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GNNNNNNNGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18368762|gb|BJ200847.1|BJ200847
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|162267194|gb|FC442606.1|FC442606
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|162209502|gb|FC386135.1|FC386135
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|162261088|gb|FC436949.1|FC436949
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67508592|gb|BJ941454.1|BJ941454
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67578360|gb|BJ950527.1|BJ950527
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18338320|gb|BJ170344.1|BJ170344
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18362314|gb|BJ194384.1|BJ194384
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67578398|gb|BJ950565.1|BJ950565
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67691811|gb|BJ952044.1|BJ952044
EST:     GATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: GATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|208376809|gb|DC918750.1|DC918750
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|37848504|gb|BJ606512.1|BJ606512
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|37850045|gb|BJ608053.1|BJ608053
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67719884|gb|BJ970143.1|BJ970143
EST:     TCGGGATCGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GNNNNNNNGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|37853304|gb|BJ611312.1|BJ611312
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67701294|gb|BJ961527.1|BJ961527
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67691886|gb|BJ952119.1|BJ952119
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18367944|gb|BJ200028.1|BJ200028
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18330512|gb|BJ162518.1|BJ162518
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18372924|gb|BJ204526.1|BJ204526
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18359903|gb|BJ191964.1|BJ191964
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18331938|gb|BJ163950.1|BJ163950
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|208400671|gb|DC904857.1|DC904857
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|208390277|gb|DC949517.1|DC949517
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67695988|gb|BJ956221.1|BJ956221
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|15261952|gb|BI437262.1|BI437262
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|162209503|gb|FC386136.1|FC386136
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|37843440|gb|BJ601448.1|BJ601448
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|37851377|gb|BJ609385.1|BJ609385
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18363668|gb|BJ195740.1|BJ195740
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|162267193|gb|FC442605.1|FC442605
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|208365559|gb|DC935712.1|DC935712
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67701245|gb|BJ961478.1|BJ961478
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67571191|gb|BJ944015.1|BJ944015
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67727167|gb|BJ977426.1|BJ977426
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|37840814|gb|BJ598822.1|BJ598822
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67572616|gb|BJ945440.1|BJ945440
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|67508661|gb|BJ941522.1|BJ941522
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
EST: gi|18371213|gb|BJ202815.1|BJ202815
EST:     TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAG                         GGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
genomic: TCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 16

GCGCATTGGATGAATTCGGGATTGCGACCGGAGTCGAGCGTGAAGAGCTGGAATACCAGAGTCAGgtacagactt ... ttttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtctgtgctcaggactcatattaattgtcgtgtatgactggattttcttcagGGAAAAAAGCGCTTCGACCTCGACCCACCCCGTGGGCCTTTCGGTACTAAG
                     tattaat  putative branch site (score: 16)
                                             ttttcttc  putative PPT
                  tcatattaatt  TA-rich tract