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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaggcacttatttatctgttttccttttcgtggtttgacaacttttcgtctttgccgaatttttaagcttcatgtactttgttttgttgagactacagGTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTACAG

Basic information

species Physcomitrella patens
transcript PP1S49_216V6.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348121|gb|DC916931.1|DC916931
EST:     TGCGGAAGAACATTCAAGATTTGGTGCCGAAAGCTATCATGCATTTCTTG                         GTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTAC
genomic: TGCGGAAGAACATTCAAGATTTGGTGCCGAAAGCTATCATGCATTTCTTGgtttgtcatt ... gagactacagGTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTAC
EST: gi|37837802|gb|BJ595810.1|BJ595810
EST:     TGCGGAAGAACATTCAAGATTTGGTGCCGAAAGCTATCATGCATTTCTTG                         GTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTAC
genomic: TGCGGAAGAACATTCAAGATTTGGTGCCGAAAGCTATCATGCATTTCTTGgtttgtcatt ... gagactacagGTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTAC
EST: gi|22492318|gb|BU052241.1|BU052241
EST:     TGCGGAAGAACATTCAAGATTTGGTGCCGAAAGCTATCATGCATTTCTTG                         GTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTAC
genomic: TGCGGAAGAACATTCAAGATTTGGTGCCGAAAGCTATCATGCATTTCTTGgtttgtcatt ... gagactacagGTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgtctttgccgaatttttaagcttcatgtactttgttttgttgagactacagGTTAATCACGTGAAAAGGGAACTGCATAGTGTATTTATTCGAAAGTTGTACAG
              aatttttaa  TA-rich tract