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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagtttctttttataatttagtgcaggataatagagtgcacatccaaatctaccactattttctaaatatgtaatcttgctcgtgatcggtggttcagTTTGTAAGGAGGGCTGCTGCTGCAGATGTTGCTTCTCCTGCTCCACAGGTGCAGCAGCACCCAGCAACCTCCAATGGCCATAAGCCATTAGTAGAACTTG

Basic information

species Physcomitrella patens
transcript PP1S427_2V6.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162154935|gb|FC331977.1|FC331977
EST:     CTAAGGAGGGTGTTCCTAGCCGGAAGTCGTTAGAAGATCTTGGAAGAATG                         TTTGTAAGGAGGGCTGCTGCTGCAGATGTTGCTTCTCCTGCTCCACAGGTG
genomic: CTAAGGAGGGTGTTCCTAGCCGGAAGTCGTTAGAAGATCTTGGAAGAATGgtactttcgt ... ggtggttcagTTTGTAAGGAGGGCTGCTGCTGCAGATGTTGCTTCTCCTGCTCCACAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaatctaccactattttctaaatatgtaatcttgctcgtgatcggtggttcagTTTGTAAGGAGGGCTGCTGCTGCAGATGTTGCTTCTCCTGCTCCACAGGTGCAGCAGCACCCAGCAACCTCCAATGGCCATAAGCCATTAGTAGAACTTG
                 ttctaaa  putative branch site (score: 2)
             tattttctaaatatgt  TA-rich tract