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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcataactgttattgttgaagatgtagacagcaccctctgtcattatatgtatggagtattgaaggcttttgtcttctcataactcgttcaggtctcttactgaatatgttactgtattttttgtgggctacagTAGTATGGCGACTGCAAGAATTCAAGAACTATTAATGGAGGATCAAGAGGTCAAGGCGCGTCGAGAGAAGGCCCACAAACAAGCAGCAGCCTTAGCGAAG

Basic information

species Physcomitrella patens
transcript PP1S38_177V6.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193182|gb|FC369435.1|FC369435
EST:     GTGGAGAGAGCTAAGGATGCTATGCTTAACCAACTTTACAGCTCCATCAG                         TAGTATGGCGACTGCAAGAATTCAAGAACTATTAATGGAGGATCAAGAGGT
genomic: GTGGAGAGAGCTAAGGATGCTATGCTTAACCAACTTTACAGCTCCATCAGgtacgcataa ... tgggctacagTAGTATGGCGACTGCAAGAATTCAAGAACTATTAATGGAGGATCAAGAGGT
EST: gi|37838707|gb|BJ596715.1|BJ596715
EST:     GTGGAGAGAGCTAAGGATGCTATGCTTAACCAACTTTACAGCTCCATCAG                         TAGTATGGCGACTGCAAGAATTCAAGAACTATTAATGGAGGATCAAGAGGT
genomic: GTGGAGAGAGCTAAGGATGCTATGCTTAACCAACTTTACAGCTCCATCAGgtacgcataa ... tgggctacagTAGTATGGCGACTGCAAGAATTCAAGAACTATTAATGGAGGATCAAGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataactcgttcaggtctcttactgaatatgttactgtattttttgtgggctacagTAGTATGGCGACTGCAAGAATTCAAGAACTATTAATGGAGGATCAAGAGGTCAAGGCGCGTCGAGAGAAGGCCCACAAACAAGCAGCAGCCTTAGCGAAG
                                      ttttttgt  CT-rich tract
                              ttactgtatttttt  TA-rich tract