1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ctaatagaataaacacatggtattattggtcgtataagcacattaataacactcaacgctacaaattctgtacactaatctcaagctaattcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGCCGCTGGTATATCCACATGTTTAGCTTCCTCAAGGGCTGCGGGGCGTTC
species | Physcomitrella patens |
transcript | PP1S332_33V6.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|162157802|gb|FC334073.1|FC334073
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|37839483|gb|BJ597491.1|BJ597491
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: ATACAGAGACACTGATATCAAAGAACTCAGGCGTTCT-GTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|18338828|gb|BJ170853.1|BJ170853
genomic: ATACAGAGACACTGATATCAAAGAACTCAGGCG-TCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|208392909|gb|DC928595.1|DC928595
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|162157803|gb|FC334074.1|FC334074
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|37830327|gb|BJ588339.1|BJ588339
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|37850227|gb|BJ608235.1|BJ608235
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCCACATGTGGATGCCCGATTATTCEST: gi|37828947|gb|BJ586959.1|BJ586959
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGA-CCACATGTGGATGCCCGATTATTC
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGEST: gi|162164171|gb|FC339594.1|FC339594
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
EST: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGAT GCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
genomic: GATACAGAGACACTGATATCAAAGAACTCAGGCGTCTGGTTCAAGATGATgtgcgtctct ... tcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCG
ataacactcaacgctacaaattctgtacactaatctcaagctaattcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGCCGCTGGTATATCCACATGTTTAGCTTCCTCAAGGGCTGCGGGGCGTTC
ttcttttgc CT-rich tract
taattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatagaataaacacatggtattattggtcgtataagcacattaataacactcaacgctacaaattctgtacactaatctcaagctaattcttttgcagGCTGTATTGTTGAAGTACATCGAAGACCACATGTGGATGCCCGATTATTCGCCGCTGGTATATCCACATGTTTAGCTTCCTCAAGGGCTGCGGGGCGTTC
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