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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaagaaggtaagcgtggagatataacaaaattactgctcttttgaaacaggtggtacgataattaacaatttttctggttttgtattgctgtgcgcagAGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACATAACATTTGTATTGGCTGTGGGACGGTTCATACGTTTGCAATGCTCAGA

Basic information

species Physcomitrella patens
transcript PP1S29_116V6.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162242984|gb|FC417832.1|FC417832
EST:     CAAGATGTTGGGCCCAATTGCGTACGTTGTATCCGAAGAAGTACCACCAA                         AGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACA
genomic: CAAGATGTTGGGCCCAATTGCGTACGTTGTATCCGAAGAAGTACCACCAAgtaacaatct ... ctgtgcgcagAGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACA
EST: gi|162177888|gb|FC355138.1|FC355138
EST:     CAAGATGTTGGGCCCAATTGCGTACGTTGTATCCGAAGAAGTACCACCAA                         AGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACA
genomic: CAAGATGTTGGGCCCAATTGCGTACGTTGTATCCGAAGAAGTACCACCAAgtaacaatct ... ctgtgcgcagAGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACA
EST: gi|162177887|gb|FC355137.1|FC355137
EST:     CAAGATGTTGGGCCCAATTGCGTACGTTGTATCCGAAGAAGTACCACCAA                         AGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACA
genomic: CAAGATGTTGGGCCCAATTGCGTACGTTGTATCCGAAGAAGTACCACCAAgtaacaatct ... ctgtgcgcagAGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacaggtggtacgataattaacaatttttctggttttgtattgctgtgcgcagAGGGACTATTAGGAGAAACTTTGAGTAAGTTTAGTATTTGGAGTTTGTACATAACATTTGTATTGGCTGTGGGACGGTTCATACGTTTGCAATGCTCAGA
                 aattaac  putative branch site (score: 2)
               ataattaacaattttt  TA-rich tract