1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cgagttacggtgctctaatcctcctgaatttagcaactcatatgagccctacatgaaatcttaacttttggttgttattgtttctttgtgtgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAAACCGTTTCACATTAGAGTCCGCAGTCCAAGTTTGATAGGATTTACCTT
species | Physcomitrella patens |
transcript | PP1S279_16V6.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAG GCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAEST: gi|162162921|gb|FC338131.1|FC338131
genomic: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAGgtaatctccc ... tgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
EST: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAG GCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAEST: gi|162164230|gb|FC342045.1|FC342045
genomic: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAGgtaatctccc ... tgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
EST: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAG GCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAEST: gi|162186013|gb|FC361841.1|FC361841
genomic: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAGgtaatctccc ... tgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
EST: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAG GCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAEST: gi|162168450|gb|FC344114.1|FC344114
genomic: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAGgtaatctccc ... tgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
EST: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAG GCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAEST: gi|162164231|gb|FC342046.1|FC342046
genomic: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAGgtaatctccc ... tgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
EST: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAG GCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
genomic: TTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCGAGgtaatctccc ... tgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATA
gccctacatgaaatcttaacttttggttgttattgtttctttgtgtgtgtgatagGCCACCAATTCGGAGGAACTACCGGAGTATATCCTGGGTACAACGAGGATAAACCGTTTCACATTAGAGTCCGCAGTCCAAGTTTGATAGGATTTACCTT
tcttaac putative branch site (score: 4)
aaatcttaactttt TA-rich tract