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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggattttctccttaggtgtcaatggaaagtacgggtggatgctcctcacttatcgagtatcgcaacaagattaggttgtagatttctgtcaacgttttgcttgcttcaagcgccaacgcaattgcttatgtaagttggagaagtgtgacctcttttgtttatttgtgatttagGAAGTAAACATTATAAGGCGGGAGACAGTACCCTCAACAGACAG

Basic information

species Physcomitrella patens
transcript PP1S26_105V6.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37843838|gb|BJ601846.1|BJ601846
EST:     TTTTACGTTTGCTTCCAGGAGCAACCTTCGAGAGGTTTGAGAAGAACCAG                         GAAGTAAACATTATAAGGCGGGAGACAGTACCCTCAACAGACAG
genomic: TTTTACGTTTGCTTCCAGGAGCAACCTTCGAGAGGTTTGAGAAGAACCAGgttaggattt ... tgtgatttagGAAGTAAACATTATAAGGCGGGAGACAGTACCCTCAACAGACAG
EST: gi|37827983|gb|BJ585995.1|BJ585995
EST:     TTTTACGTTTGCTTCCAGGAGCAACCTTCGAGAGGTTTGAGAAGAACCAG                         GAAGTAAACATTATAAGGCGGGAGACAGTACCCTCAACAGACAG
genomic: TTTTACGTTTGCTTCCAGGAGCAACCTTCGAGAGGTTTGAGAAGAACCAGgttaggattt ... tgtgatttagGAAGTAAACATTATAAGGCGGGAGACAGTACCCTCAACAGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattgcttatgtaagttggagaagtgtgacctcttttgtttatttgtgatttagGAAGTAAACATTATAAGGCGGGAGACAGTACCCTCAACAGACAG
                              cctcttttgtttattt  CT-rich tract
                                       tttatttgtgattta  TA-rich tract