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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagttttctcacttatatcttgctgaagatgttgcttcaattcattggacttactgtcataggtttactaggaggcagcaatacatttgttggtctatgaataagtttacatgtttccttggtcgaattttcaacctgatgactgttttcttgatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG

Basic information

species Physcomitrella patens
transcript PP1S187_100V6.2
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828396|gb|BJ586408.1|BJ586408
EST:     TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTG                         GTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
genomic: TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTGgtttgtagtt ... gatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
EST: gi|162202221|gb|FC377570.1|FC377570
EST:     TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTG                         GTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
genomic: TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTGgtttgtagtt ... gatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
EST: gi|37836254|gb|BJ594262.1|BJ594262
EST:     TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTG                         GTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
genomic: TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTGgtttgtagtt ... gatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
EST: gi|18336786|gb|BJ168809.1|BJ168809
EST:     TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTG                         GTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
genomic: TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTGgtttgtagtt ... gatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
EST: gi|162257800|gb|FC433998.1|FC433998
EST:     TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTG                         GTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC
genomic: TGCGGAAGAATATTCAAGACTTAGTACCGAAAGCTATCATGCATTTCCTGgtttgtagtt ... gatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatgtttccttggtcgaattttcaacctgatgactgttttcttgatataacagGTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG
                                         tcttgat  putative branch site (score: 4)
                                      ttttcttg  CT-rich tract
                                      ttttcttgatataa  TA-rich tract