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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggtcttgtgtggcatcttggattggcatgtttttgacaatctactgtctgcagttgagattcatcgaaacccgtcatcgtactattaaaagccctgacacgttgcgagatgttgggtgcagGGATCATCAACCTGGTGGCGGGCATCGGAAGCGAGATTTGGCAAAATCATTTCGTCACACATTATCATGCAAGTGCGACCCACCTATGGGTATTTGCCAG

Basic information

species Physcomitrella patens
transcript PP1S174_62V6.2
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191464|gb|FC368208.1|FC368208
EST:     TTGTCTGCTGATGTGGCTCTGCGGCGACAACCACATACCATATTAGCAAG                         GGATCATCAACCTGGTGGCGGGCATCGGAAGCGAGATTTGGCAAAATCATT
genomic: TTGTCTGCTGATGTGGCTCTGCGGCGACAACCACATACCATATTAGCAAGgtagggtctt ... ttgggtgcagGGATCATCAACCTGGTGGCGGGCATCGGAAGCGAGATTTGGCAAAATCATT
EST: gi|162275997|gb|FC452065.1|FC452065
EST:     GGCGACAACCACATACCATATTAGCAAG                         GGATCATCAACCTGGTGGCGGGCATCGGAAGCGAGATTTGGCAAAATCATT
genomic: GGCGACAACCACATACCATATTAGCAAGgtagggtctt ... ttgggtgcagGGATCATCAACCTGGTGGCGGGCATCGGAAGCGAGATTTGGCAAAATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacccgtcatcgtactattaaaagccctgacacgttgcgagatgttgggtgcagGGATCATCAACCTGGTGGCGGGCATCGGAAGCGAGATTTGGCAAAATCATTTCGTCACACATTATCATGCAAGTGCGACCCACCTATGGGTATTTGCCAG
                         ccctgac  putative branch site (score: 3)
 tactattaaaa  TA-rich tract