Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgttattcgtcgttctttgcttccttgaatattttttacgtgaactttagaaacatgatgtttgaaagtgaatttgaacgcacatttttgctgacgtcagtaatcactctcttgcaatgtcttgagggtctagtcgctgctgctcattaactacggcattgcaaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGATGAACTTGTTGTTTGAGGCTTCCATGTGTTCGTGTTTCATTCCAATCAA

Basic information

species Physcomitrella patens
transcript PP1S101_120V6.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194885|gb|FC369002.1|FC369002
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162203132|gb|FC378527.1|FC378527
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162157765|gb|FC335479.1|FC335479
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162164420|gb|FC341559.1|FC341559
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162194884|gb|FC369001.1|FC369001
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162164419|gb|FC341558.1|FC341558
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|37853190|gb|BJ611198.1|BJ611198
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162203133|gb|FC378528.1|FC378528
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|37851584|gb|BJ609592.1|BJ609592
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|37851635|gb|BJ609643.1|BJ609643
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
EST: gi|162157764|gb|FC335478.1|FC335478
EST:     TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTG                         GTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA
genomic: TATGTGTATTTCGACTTCCACGTCGTCCACAATGACTATCAACAAGGCTGgtatgcttgt ... aaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttgagggtctagtcgctgctgctcattaactacggcattgcaaccgtgcagGTGTCAACGAATCAAGACAGAGTTCACGTTTGAGTACTGTTATCTCGAGGATGAACTTGTTGTTTGAGGCTTCCATGTGTTCGTGTTTCATTCCAATCAA
                           cattaac  putative branch site (score: 2)
                            attaacta  TA-rich tract