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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttattcctcaaggatgtactcaatccacgggtattctagcttatggcgcgcgcctttaatatcatctctgtcctaatacaatttttcttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCATTTACAAGATATAGACGAGATATCATCGACATTGTAATAGAGGCGTACTT

Basic information

species Physcomitrella patens
transcript PP1S59_173V6.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18340775|gb|BJ172806.1|BJ172806
EST:     AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAG                         GTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
genomic: AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAGgtgtgcttcc ... cttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
EST: gi|37832630|gb|BJ590642.1|BJ590642
EST:     AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAG                         GTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
genomic: AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAGgtgtgcttcc ... cttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
EST: gi|162266710|gb|FC442863.1|FC442863
EST:     AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAG                         GTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
genomic: AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAGgtgtgcttcc ... cttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
EST: gi|162266709|gb|FC442862.1|FC442862
EST:     AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAG                         GTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
genomic: AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAGgtgtgcttcc ... cttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
EST: gi|67720706|gb|BJ970965.1|BJ970965
EST:     AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAG                         GTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT
genomic: AAAAGTTACGATTCGGGTTTGAGTCCAGTGGCCGCATTCTTACTTCACAGgtgtgcttcc ... cttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggcgcgcgcctttaatatcatctctgtcctaatacaatttttcttagtgcagGTGGCAAGGTCAAGTCTCAAAAGACCTAAATTTTCGTCGCTAACATCTCATTTACAAGATATAGACGAGATATCATCGACATTGTAATAGAGGCGTACTT
                             tcctaat  putative branch site (score: 2)
                                        tttttctt  putative PPT
                                taatacaatttttctt  TA-rich tract