Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacaaaattattgatagtgatggatccactgaaaagcaaggtggcatttatcttctggtggaacagcgcctcacactctttcacaatgtgcaatttcagAGAGTATTCAACCTTCATCGCCAATCAAATCCCCAATCAGAAGCCGAGGACGCATGCTTTGTTTAGTCGTATATATATCTTTTTGTTCTTCTGGACAAAG

Basic information

species Physcomitrella patens
transcript PP1S58_81V6.2
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162182992|gb|FC360558.1|FC360558
EST:     GGATTGAAAGGATCAATGAGCTTCGGACATAAACGAAGATTTTTGGAAAG                         AGAGTATTCAACCTTCATCGCCAATCAAATCCCCAATCAGAAGCCGAGGAC
genomic: GGATTGAAAGGATCAATGAGCTTCGGACATAAACGAAGATTTTTGGAAAGgtaaaaaatc ... gcaatttcagAGAGTATTCAACCTTCATCGCCAATCAAATCCCCAATCAGAAGCCGAGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttatcttctggtggaacagcgcctcacactctttcacaatgtgcaatttcagAGAGTATTCAACCTTCATCGCCAATCAAATCCCCAATCAGAAGCCGAGGACGCATGCTTTGTTTAGTCGTATATATATCTTTTTGTTCTTCTGGACAAAG
                       gcctcac  putative branch site (score: 3)
                                               aatttca  TA-rich tract