1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtttgaattagtcctcccctctaaccctgttgaagttgtttaatttataatattttggaacgaccgctccatgtatcttcttataatgtagcttttacggtttcgctaatctgtcttccttttagttaattgtttgtagcatatgctgatctgttctatatatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTCTTCATGGTCGTAGGTTTGGCGGACATTCTGTTGTTGCTGTCTACTATC
species | Physcomitrella patens |
transcript | PP1S58_254V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTEST: gi|162183240|gb|FC360390.1|FC360390
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTEST: gi|162165760|gb|FC341214.1|FC341214
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTEST: gi|67696982|gb|BJ957215.1|BJ957215
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTEST: gi|162184034|gb|FC359404.1|FC359404
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTEST: gi|162244000|gb|FC422329.1|FC422329
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTEST: gi|162184033|gb|FC359403.1|FC359403
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
EST: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAG GTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
genomic: TCGTCATTCCTAGGCCAAGAGATGGCGAAGACGTTCCTGGTGTTGGCAAGgtttgaatta ... tatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCT
ttccttttagttaattgtttgtagcatatgctgatctgttctatatatgtttcagGTCTTTGTCGAATATTCAGACACAGCAGGTGCCGCGAAAGCAAAAGCATCTCTTCATGGTCGTAGGTTTGGCGGACATTCTGTTGTTGCTGTCTACTATC
tgctgat putative branch site (score: 12)
tttagttaattgttt TA-rich tract