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gtaggtggcaattaattgtgtatatgttttggtaaatatgtctttcataatcttgccagcatttatatccatgtatgttactgacgtgtattgatctatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGTCAATGGCAATGGAGCTAGATGTTGGAGCTTGCACTCAAGATACTCAAG
species | Physcomitrella patens |
transcript | PP1S495_6V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACG GGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGEST: gi|162160376|gb|FC337377.1|FC337377
genomic: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGgtaggtggca ... tatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
EST: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACG GGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGEST: gi|162239004|gb|FC416182.1|FC416182
genomic: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGgtaggtggca ... tatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
EST: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACG GGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGEST: gi|37828639|gb|BJ586651.1|BJ586651
genomic: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGgtaggtggca ... tatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
EST: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGG GGAGGTGACATGGAAAGGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGEST: gi|37850207|gb|BJ608215.1|BJ608215
genomic: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAAC-Ggtaggtggca ... tatgaatcagGGAGGTGACATGGAAA-GGGCAGCCGAGTGGATCTTGAACCACCCTGAGG
EST: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACG GGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCNTGAGGAGEST: gi|162239003|gb|FC416181.1|FC416181
genomic: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGgtaggtggca ... tatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
EST: TCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACG GGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGEST: gi|162160375|gb|FC337376.1|FC337376
genomic: TCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGgtaggtggca ... tatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
EST: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACG GGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
genomic: TATCGTTTGGGTTTCTGCCCGAAATGGCTCGAAAAGCATTGAAAGCAACGgtaggtggca ... tatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAG
cttgccagcatttatatccatgtatgttactgacgtgtattgatctatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGTCAATGGCAATGGAGCTAGATGTTGGAGCTTGCACTCAAGATACTCAAG
atttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtggcaattaattgtgtatatgttttggtaaatatgtctttcataatcttgccagcatttatatccatgtatgttactgacgtgtattgatctatgaatcagGGAGGTGACATGGAAAGGGCAGCCGAGTGGATCTTGAACCACCCTGAGGAGTCAATGGCAATGGAGCTAGATGTTGGAGCTTGCACTCAAGATACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT