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...tcgcttgcatggtttcggtatattgccgttgaaacatttcaattgtttgttgcgttaagttaatatatttgcgtactgtgaaactctttcactgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA
species | Physcomitrella patens |
transcript | PP1S400_36V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|208362840|gb|DC950640.1|DC950640
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|162185105|gb|FC362239.1|FC362239
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|18341395|gb|BJ173430.1|BJ173430
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|67692629|gb|BJ952862.1|BJ952862
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|162162677|gb|FC338979.1|FC338979
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|37836488|gb|BJ594496.1|BJ594496
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|37841576|gb|BJ599584.1|BJ599584
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAEST: gi|37849444|gb|BJ607452.1|BJ607452
genomic: CTGGCTATTTTTGTGAAGCAGATGTCACTGACCGTAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
EST: TAAATTGCAGAAGAAG ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
genomic: TAAATTGCAGAAGAAGgtatgctgct ... actgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAA
tttgttgcgttaagttaatatatttgcgtactgtgaaactctttcactgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA
agttaat putative branch site (score: 13)
ctctttcactgtttc putative PPT
ttaagttaatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgcttgcatggtttcggtatattgccgttgaaacatttcaattgtttgttgcgttaagttaatatatttgcgtactgtgaaactctttcactgtttcagATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA