1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tcaatgtccgcagtgtgatatccttcacagcagtaaaattcaagttctcttgaaattcaatatccaactttgtttgaccaagtgcccacaatttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGAGAGAAAGGCGCGTGATTGTCAGAAAGGCCTAAGGACGTCTTGGTTGTG
species | Physcomitrella patens |
transcript | PP1S355_49V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACT ATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGEST: gi|37821788|gb|BJ579854.1|BJ579854
genomic: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
EST: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACT ATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGEST: gi|37828249|gb|BJ586261.1|BJ586261
genomic: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
EST: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACT ATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGEST: gi|162162197|gb|FC337979.1|FC337979
genomic: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
EST: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACT ATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGEST: gi|37846066|gb|BJ604074.1|BJ604074
genomic: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
EST: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACT ATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGEST: gi|162275490|gb|FC451869.1|FC451869
genomic: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
EST: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACT ATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGEST: gi|162170825|gb|FC347439.1|FC347439
genomic: AGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
EST: AACCGGTCTGGGAGAGTCAACT ATACGGGGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
genomic: AACCGGTCTGGGAGAGTCAACTgtaagtttgc ... atttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGG
tctcttgaaattcaatatccaactttgtttgaccaagtgcccacaatttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGAGAGAAAGGCGCGTGATTGTCAGAAAGGCCTAAGGACGTCTTGGTTGTG
gtttgac putative branch site (score: 4)
tttttgc putative PPT
aaattcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatgtccgcagtgtgatatccttcacagcagtaaaattcaagttctcttgaaattcaatatccaactttgtttgaccaagtgcccacaatttttgcagATACGGCGAGCACTCATTGTGATGGCTCAACGAGATGAGATCGAGTATAGGAGAGAAAGGCGCGTGATTGTCAGAAAGGCCTAAGGACGTCTTGGTTGTG
- - - - - - - - - - - cttcaca