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...agggaaatagaggtgtaaaaaagattggataaatacgtcttttccatgcagttttgcgtatttcatcttctgagtggcgaatctatgtgtacttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTCAAGGAGGATATTGCTGAAGGATACAGAGACACTGATATCAAAGAACTC
species | Physcomitrella patens |
transcript | PP1S332_33V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTEST: gi|18338828|gb|BJ170853.1|BJ170853
genomic: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
EST: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTEST: gi|208392909|gb|DC928595.1|DC928595
genomic: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
EST: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTEST: gi|162157803|gb|FC334074.1|FC334074
genomic: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
EST: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTEST: gi|37830327|gb|BJ588339.1|BJ588339
genomic: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
EST: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTEST: gi|37850227|gb|BJ608235.1|BJ608235
genomic: ATGACACCGGAGCAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
EST: AGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTEST: gi|37828947|gb|BJ586959.1|BJ586959
genomic: AGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
EST: TGACACCGGAGCAAATTGGAAGAAGGGATCATATATCCTGCTGTATCCAG GATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
genomic: TGACACCGGAGC-AATTGGAAGAAGGGATCATATATCCTGCTGTATCCAGgtgtgatctt ... acttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGT
atgcagttttgcgtatttcatcttctgagtggcgaatctatgtgtacttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTCAAGGAGGATATTGCTGAAGGATACAGAGACACTGATATCAAAGAACTC
tatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggaaatagaggtgtaaaaaagattggataaatacgtcttttccatgcagttttgcgtatttcatcttctgagtggcgaatctatgtgtacttgaatagGATTCGGGAGATCACAGCTCGAGTGGCAGCAGCAATAGTGAAAGAGGCAGTCAAGGAGGATATTGCTGAAGGATACAGAGACACTGATATCAAAGAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC