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...tgtatttgaatgatcatggacccttccatattcgcaatgaccaactaatgtaaattattgagaaatatgagctattctaatccgtgatgaaactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTCAATCTACATCAAGTACTTGAAGCAATCTCTTCATGAAAACACGTCTTT
species | Physcomitrella patens |
transcript | PP1S329_23V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|162232857|gb|FC407809.1|FC407809
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|37827666|gb|BJ585678.1|BJ585678
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|162173461|gb|FC349840.1|FC349840
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|162244026|gb|FC422342.1|FC422342
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|162244027|gb|FC422343.1|FC422343
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CANACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|67569435|gb|BJ942259.1|BJ942259
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|37833090|gb|BJ591102.1|BJ591102
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|18335774|gb|BJ167795.1|BJ167795
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTEST: gi|37834598|gb|BJ592610.1|BJ592610
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
EST: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACG CAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
genomic: AATGTGGTTCGATAACACTCTTGACAAACCAAGCCCTCTTCATGATTACGgtaaattaca ... aactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTT
taatgtaaattattgagaaatatgagctattctaatccgtgatgaaactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTCAATCTACATCAAGTACTTGAAGCAATCTCTTCATGAAAACACGTCTTT
ttctaat putative branch site (score: 3)
ctttcc putative PPT
taaattattgagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatttgaatgatcatggacccttccatattcgcaatgaccaactaatgtaaattattgagaaatatgagctattctaatccgtgatgaaactttccagCAAACAAAATGTGGAGTGGCTTGACTCGTGACTACTACCTTCCAAGAGCTTCAATCTACATCAAGTACTTGAAGCAATCTCTTCATGAAAACACGTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA