1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttcgttcccaactttgctcacttatctaattgctattggatgcaacttcaagccatcaggctgttttatacccctccccatgttgagtcttgctcatacctcgacgcctcttgattgatatccttgaatgtcttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGGTTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCG
species | Physcomitrella patens |
transcript | PP1S279_16V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TAGGCAAAGCTGTTACTTGTAATTACTTAAGGGAAGATAATTTTCTCGAG ATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGEST: gi|162162921|gb|FC338131.1|FC338131
genomic: TAGGCAAAGCTGTTACTTGTAATTACTTTAGGGAAGATAATTTTCTCGAGgttcgttccc ... cttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTG
EST: TAGGCAAAGCTGTTACTTGTAATTACTTAAGGGAAGATAATTTTCTCGAG ATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGEST: gi|162164230|gb|FC342045.1|FC342045
genomic: TAGGCAAAGCTGTTACTTGTAATTACTTTAGGGAAGATAATTTTCTCGAGgttcgttccc ... cttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTG
EST: TAGGCAAAGCTGTTACTTGTAATTACTTAAGGGAAGATAATTTTCTCGAG ATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGEST: gi|162168450|gb|FC344114.1|FC344114
genomic: TAGGCAAAGCTGTTACTTGTAATTACTTTAGGGAAGATAATTTTCTCGAGgttcgttccc ... cttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTG
EST: TAGGCAAAGCTGTTACTTGTAATTACTTAAGGGAAGATAATTTTCTCGAG ATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGEST: gi|162164231|gb|FC342046.1|FC342046
genomic: TAGGCAAAGCTGTTACTTGTAATTACTTTAGGGAAGATAATTTTCTCGAGgttcgttccc ... cttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTG
EST: TAGGCAAAGCTGTTACTTGTAATTACTTAAGGGAAGATAATTTTCTCGAG ATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTG
genomic: TAGGCAAAGCTGTTACTTGTAATTACTTTAGGGAAGATAATTTTCTCGAGgttcgttccc ... cttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTG
gtcttgctcatacctcgacgcctcttgattgatatccttgaatgtcttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGGTTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCG
gattgat putative branch site (score: 5)
tgtcttttttc putative PPT
attgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttcccaactttgctcacttatctaattgctattggatgcaacttcaagccatcaggctgttttatacccctccccatgttgagtcttgctcatacctcgacgcctcttgattgatatccttgaatgtcttttttcagATTGATGTGGACATTGGTTCCTCTTCTGTTGCACGCAATGTTGTGGGTCTGGTTTTGGGTTACGTAACCAGCATCGTCGTTGACCTGGCTGTTTTGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT