1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagttttcggcctctacgaacatctcagtgctttcttgcagatttgcaagttcctgatatctagctacgttaattatgtaaaatattatctttggctgcatgcttgatgcaatactgacaagagcgacgaatttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCGGTATGCCTGGTTTGGGTGGAGGTATGCCTGTGCCGGGTATGGGTGGAG
species | Physcomitrella patens |
transcript | PP1S7_102V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCEST: gi|162170286|gb|FC346483.1|FC346483
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
EST: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCEST: gi|67723981|gb|BJ974240.1|BJ974240
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
EST: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCEST: gi|100429530|gb|BY959609.1|BY959609
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
EST: AG-AGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGGTCTAC-AGCTCCCCCTGTTGCCEST: gi|162265731|gb|FC443137.1|FC443137
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
EST: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCEST: gi|162280168|gb|FC455977.1|FC455977
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
EST: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCEST: gi|162154467|gb|FC330469.1|FC330469
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
EST: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCG AACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
genomic: AGGAGAAGAAGTCTAAAGAGCAGCAGGAAAAGGACGTAGTTGCTGAGTCGgtaagttttc ... ttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCC
atctttggctgcatgcttgatgcaatactgacaagagcgacgaatttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCGGTATGCCTGGTTTGGGTGGAGGTATGCCTGTGCCGGGTATGGGTGGAG
tactgac putative branch site (score: 3)
tttttat putative PPT
aatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttcggcctctacgaacatctcagtgctttcttgcagatttgcaagttcctgatatctagctacgttaattatgtaaaatattatctttggctgcatgcttgatgcaatactgacaagagcgacgaatttttatgcagAACATGTACGCTCAGCTCTTGCCTCTGGCTCTACCAGCTCCCCCTGTTGCCGGTATGCCTGGTTTGGGTGGAGGTATGCCTGTGCCGGGTATGGGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG