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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcatgtgtatcaacttatatcttctatttcaaacgttctggtagtggttgcttggggtacaaggggatgccttctgtaagtaccaagttggcaatgtttgatcctgatgatgcctgaaaatctttctgtgtttaactatatttttgttgtgctgttcccagTGGGTTTCCGGTTAAATTGTTGTTGCGCAATTCCATTTACGAAGACATCAGCCACTTTTAACTTCTGTGTGCTCAAAGGTGTTGCGCTTTGCTCAATAAA

Basic information

species Physcomitrella patens
transcript PP1S77_113V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37830106|gb|BJ588118.1|BJ588118
EST:     TAGCACGTTGTATTCCCCTAAGAAAACACTTTACAAAATGTTAGTTTCAG                         TGGGTTTCCGGTTAAATTGTTGTTGCGCAATTCCATTTACGAAGACATCAG
genomic: TAGCACGTTGTATTCCCCTAAGAAAACACTTTACAAAATGTTAGTTTCAGgtactcatgt ... ctgttcccagTGGGTTTCCGGTTAAATTGTTGTTGCGCAATTCCATTTACGAAGACATCAG
EST: gi|162239396|gb|FC414013.1|FC414013
EST:     TAGCACGTTGTATTCCCCTAAGAAAACACTTTACAAAATGTTAGTTTCAG                         TGGGTTTCCGGTTAAATTGTTGTTGCGCAATTCCATTTACGAAGACATCAG
genomic: TAGCACGTTGTATTCCCCTAAGAAAACACTTTACAAAATGTTAGTTTCAGgtactcatgt ... ctgttcccagTGGGTTTCCGGTTAAATTGTTGTTGCGCAATTCCATTTACGAAGACATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgcctgaaaatctttctgtgtttaactatatttttgttgtgctgttcccagTGGGTTTCCGGTTAAATTGTTGTTGCGCAATTCCATTTACGAAGACATCAGCCACTTTTAACTTCTGTGTGCTCAAAGGTGTTGCGCTTTGCTCAATAAA
                       gtttaac  putative branch site (score: 3)
                                             ctgttccc  putative PPT
                        tttaactatatttttg  TA-rich tract