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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcacaatttaattcctttgaggtccatgtttgaaatttattactttggcggctgtgtccgattgtcctcgaggtctgatttttcatcgtcttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAAAATATGCCAGAAACAAATGCTTCAGCGGGTCAATTAGTCAGTCAACAAG

Basic information

species Physcomitrella patens
transcript PP1S69_10V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162254500|gb|FC430284.1|FC430284
EST:     TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAG                         ATTAAGAATTATGTATCAGAAAAACTNCA-CTTGGAAAGACCCCTTGAAGA
genomic: TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAGgtgagctcct ... cttttgacagATTAAGAATTATGTATCAGAAAAACT-CAACTTGGAAAGACCCCTTGAAGA
EST: gi|162279629|gb|FC455368.1|FC455368
EST:     TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAG                         ATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
genomic: TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAGgtgagctcct ... cttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
EST: gi|162186475|gb|FC363031.1|FC363031
EST:     TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAG                         ATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
genomic: TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAGgtgagctcct ... cttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
EST: gi|162279630|gb|FC455369.1|FC455369
EST:     TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAG                         ATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAA
genomic: TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAGgtgagctcct ... cttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAA
EST: gi|37842384|gb|BJ600392.1|BJ600392
EST:     TCNTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAG                         ATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
genomic: TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAGgtgagctcct ... cttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
EST: gi|162254499|gb|FC430283.1|FC430283
EST:     TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAG                         ATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA
genomic: TCCTCACACAAGGAAAGTTGAGTGCACCACGTATTCTTCGGATACACAAGgtgagctcct ... cttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcggctgtgtccgattgtcctcgaggtctgatttttcatcgtcttttgacagATTAAGAATTATGTATCAGAAAAACTCAACTTGGAAAGACCCCTTGAAGAAAATATGCCAGAAACAAATGCTTCAGCGGGTCAATTAGTCAGTCAACAAG
                            gtctgat  putative branch site (score: 4)
                                  tttttcatcgtctttt  CT-rich tract
                                 atttttcat  TA-rich tract