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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttggattgccttggtcctattgctcttacattcgccgagtcttggtatgcagaatcttgctgtgtggtcgttactttttaacagagttttgttggacagGCCTGCTGTTGAAGACGTTCGCTGGCAAGATCCTGAGGAAAACATTTCAGACGACGACGAGGGATGTATACCTGATGAGGACAATACAGACGGACCTAAA

Basic information

species Physcomitrella patens
transcript PP1S58_81V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162197605|gb|FC374439.1|FC374439
EST:     AGTCGGGAGGAGTCCGAGAGGAGCTTCCCTCGTACTTTACATGCGGATAG                         GCCTGCTGTTGAAGACGTTCGCTGGCAAGATCCTGAGGAAAACATTTCAGA
genomic: AGTCGGGAGGAGTCCGAGAGGAGCTTCCCTCGTACTTTACATGCGGATAGgtatgtgaat ... tgttggacagGCCTGCTGTTGAAGACGTTCGCTGGCAAGATCCTGAGGAAAACATTTCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgcagaatcttgctgtgtggtcgttactttttaacagagttttgttggacagGCCTGCTGTTGAAGACGTTCGCTGGCAAGATCCTGAGGAAAACATTTCAGACGACGACGAGGGATGTATACCTGATGAGGACAATACAGACGGACCTAAA
                               ttttaac  putative branch site (score: 2)
                                          ttttgtt  putative PPT
                          ttactttttaa  TA-rich tract