1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...attctatgttttctggagttttggatctcctagaggattctcatatttctctttttttttttttgttggtatacagctttactgttctgtacttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACATTGAGCAATACGAAGCTGATCCTGCCAAGATATTCGAACCCTCTGCCG
species | Physcomitrella patens |
transcript | PP1S4_12V6.3 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162276462|gb|FC452465.1|FC452465
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|18341150|gb|BJ173183.1|BJ173183
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|18338573|gb|BJ170597.1|BJ170597
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162184967|gb|FC362413.1|FC362413
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162187300|gb|FC363458.1|FC363458
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162184968|gb|FC362414.1|FC362414
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|208382001|gb|DC923846.1|DC923846
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162206764|gb|FC383237.1|FC383237
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|67725611|gb|BJ975870.1|BJ975870
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162206765|gb|FC383238.1|FC383238
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|37850179|gb|BJ608187.1|BJ608187
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162257952|gb|FC433838.1|FC433838
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162175774|gb|FC352076.1|FC352076
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTTTCGGCTG GTGTTCCGTCTCTTTGGAACTGGTTCAGTGGGCGCTACGATTTGTCTGTACEST: gi|162178505|gb|FC354957.1|FC354957
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: ATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162178864|gb|FC354796.1|FC354796
genomic: ATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|67692041|gb|BJ952274.1|BJ952274
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|37828076|gb|BJ586088.1|BJ586088
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGCCTGTACEST: gi|162159186|gb|FC334357.1|FC334357
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162196533|gb|FC374420.1|FC374420
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162185023|gb|FC362469.1|FC362469
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|67693718|gb|BJ953951.1|BJ953951
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162263231|gb|FC439052.1|FC439052
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTC-AGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|67727198|gb|BJ977457.1|BJ977457
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|67695071|gb|BJ955304.1|BJ955304
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162231044|gb|FC406155.1|FC406155
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162180376|gb|FC355797.1|FC355797
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACEST: gi|162263230|gb|FC439051.1|FC439051
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
EST: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTG GTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
genomic: TATCCAGCCACCAGGGTATCCGCTACCTGTTCAAGGATGGTTCTCGGCTGgtgcgtttct ... acttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTAC
tttctctttttttttttttgttggtatacagctttactgttctgtacttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACATTGAGCAATACGAAGCTGATCCTGCCAAGATATTCGAACCCTCTGCCG
tttttttttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctatgttttctggagttttggatctcctagaggattctcatatttctctttttttttttttgttggtatacagctttactgttctgtacttgtgtagGTGTTCCGTCTCTCTGGAACTGGTTCAGTGGGCGCTACGATTCGTCTGTACATTGAGCAATACGAAGCTGATCCTGCCAAGATATTCGAACCCTCTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT