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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatcggtcttatttcttggtttcacgttgctgtttactccagccaacttggaaggagttgtttatagcagtatggagtaaattgtgaaatttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGTGTTTCGGACGGTAAGGCGACGCCGTTCCATGGTACCTTCGCTGAATACA

Basic information

species Physcomitrella patens
transcript PP1S47_97V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19789030|gb|BQ041056.1|BQ041056
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|162199129|gb|FC375821.1|FC375821
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|37831033|gb|BJ589045.1|BJ589045
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|18341144|gb|BJ173177.1|BJ173177
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|18337417|gb|BJ169441.1|BJ169441
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|37828058|gb|BJ586070.1|BJ586070
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|162187556|gb|FC363818.1|FC363818
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|37836283|gb|BJ594291.1|BJ594291
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
EST: gi|162174579|gb|FC350234.1|FC350234
EST:     TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATG                         GTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT
genomic: TGGAGGCCCTTATACAAGGGCTTGCTTTATTTCAAGGAGGCGTGCTCATGgtattttatc ... tttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttggaaggagttgtttatagcagtatggagtaaattgtgaaatttggtgcagGTGAGCCACGACGAGCATTTAATTTCAGGAAGTGTAGATGAACTTTGGTGTGTTTCGGACGGTAAGGCGACGCCGTTCCATGGTACCTTCGCTGAATACA
                                 taaattgtgaaattt  TA-rich tract