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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaggcttccaaccacatattttcgaaagatttttgctggagtataagcggacagaattttctttcactgaagtgtaaaacttgtctttatatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTCGATGTAGAACGTGATTTGACAACTCCTACATTTAAACTTAAACGACCGC

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149872|gb|FC326195.1|FC326195
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162174483|gb|FC350762.1|FC350762
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162269048|gb|FC445540.1|FC445540
EST:     CACAGAAATTCTTTTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTTTCAACCGTTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162196991|gb|FC375216.1|FC375216
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162150281|gb|FC326366.1|FC326366
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|13250964|gb|BG361867.1|BG361867
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162269049|gb|FC445541.1|FC445541
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162167247|gb|FC342812.1|FC342812
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162194188|gb|FC371039.1|FC371039
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162177647|gb|FC353233.1|FC353233
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162177648|gb|FC353234.1|FC353234
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|162151929|gb|FC328890.1|FC328890
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGCTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
EST: gi|67692540|gb|BJ952773.1|BJ952773
EST:     CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGG                         CTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC
genomic: CACAGAAATTCATCTTATCAGAGCTGACAAACATGGGCAAGAAGAAAGGGgtgagtatcc ... atatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcggacagaattttctttcactgaagtgtaaaacttgtctttatatctgcagCTGAAAGGTTTTGAGTTCATCAAAGCGGTGCACTTAGATTCTCAACCGTTCGATGTAGAACGTGATTTGACAACTCCTACATTTAAACTTAAACGACCGC
                                        tctttat  CT-rich tract
           aattttcttt  TA-rich tract