1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtacacttacgattgactagatttatcgttgtaggttgcagttacgatgtggatacaaattgtgcttcatttttcttttattatcgtcagttttattgatcgaacgattcgtattttaatttatgggtcatcactcgtttcttggctgttcagGATGTGGTGGAGGAAATCGATAAGGATAGTCTTTCTAGAGAGGAGTATCCTTATGTTAAGGACCCTGCTGGCAACAGCCTCAATTCTTCCTCGTCTCCCT
species | Physcomitrella patens |
transcript | PP1S468_8V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGATGAAGATGGCTATACACTTTCAAAATTTTATCCACTACTTCAG GATGTGGTGGAGGAAATCGATAAGGATAGTCTTTCTAGAGAGGAGTATCCTEST: gi|162260782|gb|FC438138.1|FC438138
genomic: AGTTGGATGAAGATGGCTATACACTTTCAAAATTTTATCCACTACTTCAGgtacacttac ... ggctgttcagGATGTGGTGGAGGAAATCGATAAGGATAGTCTTTCTAGAGAGGAGTATCCT
EST: AGTTGGATGAAGATGGCTATACACTTTCAAAATTTTATCCACTACTTCAG GATGTGGTGGAGGAAATCGATAAGGATAGTCTTTCTAGAGAGGAGTATCCT
genomic: AGTTGGATGAAGATGGCTATACACTTTCAAAATTTTATCCACTACTTCAGgtacacttac ... ggctgttcagGATGTGGTGGAGGAAATCGATAAGGATAGTCTTTCTAGAGAGGAGTATCCT
atcgaacgattcgtattttaatttatgggtcatcactcgtttcttggctgttcagGATGTGGTGGAGGAAATCGATAAGGATAGTCTTTCTAGAGAGGAGTATCCTTATGTTAAGGACCCTGCTGGCAACAGCCTCAATTCTTCCTCGTCTCCCT
ttttaat putative branch site (score: 1)
tttcttg putative PPT
attcgtattttaattt TA-rich tract