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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgaacattgccatcacaagtagcattttggcttcgaggacactcattcttgcattttatcttatcagcataacaaatgttgacgcttatttagctaaccgatttttttttgcatgtggttttcctgcttagGCTCATGAGAAAGAAGCTGCAATGGAACTTTTCAAAACTGGCAAATCACAGATTCTAGTTTCAACGACTGTTATCGAAGTTGGAATTGACATTCCTGAGG

Basic information

species Physcomitrella patens
transcript PP1S290_9V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162168802|gb|FC344792.1|FC344792
EST:     CGGAAGAGTTTGAAGGGTTCCAGTGTGGACTTGTTCATGGTCGCATGAAG                         GCTCATGAGAAAGAAGCTGCAATGGAACTTTTCAAAACTGGCAAATCACAG
genomic: CGGAAGAGTTTGAAGGGTTCCAGTGTGGACTTGTTCATGGTCGCATGAAGgttctgaaca ... tcctgcttagGCTCATGAGAAAGAAGCTGCAATGGAACTTTTCAAAACTGGCAAATCACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgacgcttatttagctaaccgatttttttttgcatgtggttttcctgcttagGCTCATGAGAAAGAAGCTGCAATGGAACTTTTCAAAACTGGCAAATCACAGATTCTAGTTTCAACGACTGTTATCGAAGTTGGAATTGACATTCCTGAGG
               agctaac  putative branch site (score: 2)
                                          ttttcctgctt  putative PPT
                        atttttttttgcat  TA-rich tract