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gtactattcgttcagtgctttttcaacttccttttttacatgtgttggtaaaccttgattttaggtgctcctcacgaccagcttgctcacttcagcgttcttacatgtgttgatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATGTACTAGAGCAAGGGCAAGTTAATAACTTCCCTGCCGGGTTGTAGTAAT
species | Physcomitrella patens |
transcript | PP1S26_191V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATEST: gi|37820996|gb|BJ579062.1|BJ579062
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAAGGGAAACAATEST: gi|37852688|gb|BJ610696.1|BJ610696
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATEST: gi|22492795|gb|BU052718.1|BU052718
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATEST: gi|162191132|gb|FC367394.1|FC367394
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATEST: gi|37822697|gb|BJ580763.1|BJ580763
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATEST: gi|162162150|gb|FC337724.1|FC337724
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATEST: gi|162232498|gb|FC408880.1|FC408880
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
EST: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAG AAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
genomic: CCAACTCAGTCACACAATTGATCAGACTCACCAACAATATGCATGGGCAGgtactattcg ... gatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAAT
gctcctcacgaccagcttgctcacttcagcgttcttacatgtgttgatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATGTACTAGAGCAAGGGCAAGTTAATAACTTCCCTGCCGGGTTGTAGTAAT
ttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactattcgttcagtgctttttcaacttccttttttacatgtgttggtaaaccttgattttaggtgctcctcacgaccagcttgctcacttcagcgttcttacatgtgttgatattgcagAAAGCTTTAGTCATGAAGTTGAGAGTGAGCTACAAGGCAAATGGAAACAATGTACTAGAGCAAGGGCAAGTTAATAACTTCCCTGCCGGGTTGTAGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG