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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctttgcgagaatgaatggattctgtttagcacctatcctggaggtgcacattacttcttgaactaattaaaattggtctatttttccttgttggcagTGCAATCAAAGAGCGAGAGATTGCATACAAGTTTGCTGGAGCAGAAAACATCCGAGAATATTTCCAAGCCAACGGAACATCCGGGTCGGTTTTGTAGTTG

Basic information

species Physcomitrella patens
transcript PP1S168_102V6.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37840910|gb|BJ598918.1|BJ598918
EST:     AATTTCAGTACTAGCGTGAAAATTTAATGAAATTTGGTACCACTGGACAG                         TGCAATCAAAGAGCGAGAGATTGCATACAAGTTTGCTGGAGCAGAAAACAT
genomic: AATTTCAGTACTAGCGTGAAAATTTAATGAAATTTGGTACCACTGGACAGgtatgcccgg ... ttgttggcagTGCAATCAAAGAGCGAGAGATTGCATACAAGTTTGCTGGAGCAGAAAACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgcacattacttcttgaactaattaaaattggtctatttttccttgttggcagTGCAATCAAAGAGCGAGAGATTGCATACAAGTTTGCTGGAGCAGAAAACATCCGAGAATATTTCCAAGCCAACGGAACATCCGGGTCGGTTTTGTAGTTG
                  aactaat  putative branch site (score: 2)
                                  tctatttttccttgtt  putative PPT
                     taattaaaattggtct  TA-rich tract