1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagatctttggctagtttgcttttccgtttgtatgtattgattattttccctcgccatcctgatgtggattaggtgacgtgcgggtttgggtgtacacatggtgtcgttctctcaacgctgacaagtgtgacatattttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTGGTATGACTGGTATGCCTGGTATGGGCGGAGGTATGCCAATGCCGGGTA
species | Physcomitrella patens |
transcript | PP1S147_10V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCG AACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTEST: gi|162158515|gb|FC334518.1|FC334518
genomic: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCGgtaagatctt ... tttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
EST: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCG AACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTEST: gi|162176180|gb|FC351103.1|FC351103
genomic: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCGgtaagatctt ... tttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
EST: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCG AACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTEST: gi|162194818|gb|FC370508.1|FC370508
genomic: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCGgtaagatctt ... tttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
EST: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCG AACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTEST: gi|162199484|gb|FC373786.1|FC373786
genomic: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCGgtaagatctt ... tttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
EST: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCG AACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTEST: gi|162186242|gb|FC362174.1|FC362174
genomic: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCGgtaagatctt ... tttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
EST: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCG AACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
genomic: AGGAGAAGAAGTCCAAAGAGCAACAGGAAAAGGACGTAGTTGCTGAATCGgtaagatctt ... tttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCT
tgtacacatggtgtcgttctctcaacgctgacaagtgtgacatattttcctgcagAACATGTACGCTCAACTCTTGCCTCTGGCTCTACCAGCTCCTCCTGTTGCTGGTATGACTGGTATGCCTGGTATGGGCGGAGGTATGCCAATGCCGGGTA
cgctgac putative branch site (score: 7)
tattttcct putative PPT
acatatttt TA-rich tract