1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...atgggataattttaatgtgaattatgtaagcttctggtatacttctagtcgatactttggaatcacttagtgctctgattggtttaatcctgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACTCTCAGATAATGGCGGTGAAAAAGATGGACATGTCCCATCTTCGCACATT
species | Physcomitrella patens |
transcript | PP1S59_173V6.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAG AAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGGTTACEST: gi|37832630|gb|BJ590642.1|BJ590642
genomic: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAGgtactggatt ... tgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCC-GGTTAC
EST: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAG AAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACTEST: gi|162266710|gb|FC442863.1|FC442863
genomic: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAGgtactggatt ... tgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACT
EST: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAG AAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACTEST: gi|162266709|gb|FC442862.1|FC442862
genomic: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAGgtactggatt ... tgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACT
EST: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAG AAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACTEST: gi|67720706|gb|BJ970965.1|BJ970965
genomic: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAGgtactggatt ... tgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACT
EST: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAG AAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACT
genomic: CCAGGTGCTTGTGAAGTTCTTGTTAGCAAACTTCTAAGACAACTAATCAGgtactggatt ... tgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACT
tagtcgatactttggaatcacttagtgctctgattggtttaatcctgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACTCTCAGATAATGGCGGTGAAAAAGATGGACATGTCCCATCTTCGCACATT
gtttaat putative branch site (score: 6)
tcctgtttttc CT-rich tract
tttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggataattttaatgtgaattatgtaagcttctggtatacttctagtcgatactttggaatcacttagtgctctgattggtttaatcctgtttttcagAAAAGACGAAGCTCCTGTGAAAGGTCTGCAGAGCCTAGCACGCCGGTTACTCTCAGATAATGGCGGTGAAAAAGATGGACATGTCCCATCTTCGCACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA